![]() ![]() The ability to control the false discovery rate, iii) the withinĪnd between method concordances, iv) the truthfulness of theįindings if any apriori knowledge is given. Method’s distributional assumptions on the observed count data, ii) TheĪnalyses focus on 4 main aspects: i) the goodness of fit of each Supplied but the user can also add his method to the benchmark. Version of the main differential abundance analysis methods is Perform several analysis to assess the performances of manyĭifferential abundance detection methods. Implementation allows one to quantify TEs and gene transcripts inĭataset (16S or WMS with absolute count values) it is possible to Output container of the quantified expression profiles. With this object and getting a SummarizedExperiment object as Is provided to use each of these methods, which consists ofīuilding a parameter object, calling the quantification function Including ERVmap, TEtranscripts and Telescope. There are 89 new software packages in this release of Bioconductor.Ītena Quantify expression of transposableĮlements (TEs) from RNA-seq data through different methods, Bioconductor 3.14 has been designed expressly for ![]() To update to or install Bioconductor 3.14:
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